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EpiWorkshops – Fall sessions

Join us this fall for our new Epigenomics workshops season! Our à la carte program (October 22-29 & November 5-12-19-26) is completely modular. You can join the sessions that are the most relevant for your research. Plus, get an introduction to new and upcoming technologies in epigenomics analyses.

 

Each workshop will be offered several times throughout the day, as outlined in the schedule.

 

All of our live sessions are highly interactive, with a mix of lecture, demos, use cases and fun activities to help you master the techniques behind chromatin and DNA methylation studies. Novice or expert, you'll learn something new with our passionate epigenomics experts covering workflows in depth – sample preparation, wetlab protocols, library preparation, analysis and bioinformatics.

 

 

 

 

Upcoming sessions schedule:

October 22: Chromatin

Paris: 9:00am & 18:00pm
New York: 12:00pm & 18:00pm
Los Angeles: 9:00am & 15:00pm


October 29: Tagmentation

Paris: 9:00am & 17:00pm
New York: 12:00pm & 18:00pm
Los Angeles: 9:00am & 15:00pm


November 5: Bioinfo for Chromatin studies

Paris: 18:00pm
New York: 12:00pm
Los Angeles: 9:00am


November 12: DNA methylation

Paris: 9:00am & 18:00pm
New York: 12:00pm & 18:00pm
Los Angeles: 9:00am & 15:00pm


November 19: Bioinfo for DNA methylation

Paris: 18:00pm
New York: 12:00pm
Los Angeles: 9:00am


November 26: RNA-seq

Paris: 9:00am & 18:00pm
New York: 12:00pm & 18:00pm
Los Angeles: 9:00am & 15:00pm


 

 

- Epiworkshops programme -

22 Oct – ChIP 29 Oct – Tagmentation 5 Nov – Bioinfo for Chromatin studies
ChIP overview: ChIP-qPCR or ChIP-seq Chromatin profiling methods: ChIPmentation, CUT&Tag, ATAC-seq ChIP-qPCR and ChIP-seq analysis
Chromatin preparation: fixation, cell lysis and chromatin shearing Tn5 transposase, a world of applications Bioinformatics analysis: specifics of sequencing for chromatin technologies (ChIP-Seq, ATAC-Seq, Cut&Tag)
Setting up your IP: antibodies, replicates, inputs, positive/negative controls Tagmentation workflow and comparison with other methods Sequencing QC
Library preparation and sequencing iDeal CUT&Tag protocol Computer resources recommendations
Method considerations for Plant samples ATAC-seq protocol Software needed
Case study Case study  
Duration: 120 min Duration: 120 min Duration: 90 min
12 Nov – DNA methylation 19 Nov – Bioinfo for DNA methylation 26 Nov – RNA-seq
Overview of commonly used workflows for 5mC and 5hmC analysis Specifics of sequencing for single nucleotide resolution technologies (WGBS, RRBS, Targeted) Introduction on non-coding RNA
Output characteristics: resolution, quality, coverage - a comparison Sequencing QC Overview of common RNA-seq analyses
Biomarker discovery pipeline -which method to choose? Computer resources and software recommendations Our innovative take on RNA-seq: the D-Plex technology

Workflows, tips & tricks for selected methods:

• MeDIP-qPCR/-seq

• WGBS, EM-seq and RRBS

• Infinium Arrays, Human Methylome Panel

  Step-by-step workflow and example of results
Case study   A World of applications: from ribosome profiling to biomarker discovery
    Case study
Duration: 120 min Duration: 90 min Duration: 90 min